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args = commandArgs(TRUE); args.options = list(); temp.option.key = NULL; for (arg in args) { # Optional arguments declaration if (substring(arg, 1, 1) == '-') { temp.option.key = substring(arg, 2); if (substring(arg, 2, 2) == '-') { temp.option.key = substring(arg, 3); } args.options[[temp.option.key]] = TRUE; } # Optional arguments value else if (!is.null(temp.option.key)) { args.options[[temp.option.key]] = arg; temp.option.key = NULL; } }