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**Example 1: To detect medical condition entities and link to the ICD-10-CM Ontology directly from text**
The following ``infer-icd10-cm`` example labels the detected medical condition entities and links those entities with codes in the 2019 edition of the International Classification of Diseases Clinical Modification (ICD-10-CM). ::
aws comprehendmedical infer-icd10-cm \
--text "The patient complains of abdominal pain, has a long-standing history of diabetes treated with Micronase daily."
Output::
{
"Entities": [
{
"Id": 0,
"Text": "abdominal pain",
"Category": "MEDICAL_CONDITION",
"Type": "DX_NAME",
"Score": 0.9475538730621338,
"BeginOffset": 28,
"EndOffset": 42,
"Attributes": [],
"Traits": [
{
"Name": "SYMPTOM",
"Score": 0.6724207401275635
}
],
"ICD10CMConcepts": [
{
"Description": "Unspecified abdominal pain",
"Code": "R10.9",
"Score": 0.6904221177101135
},
{
"Description": "Epigastric pain",
"Code": "R10.13",
"Score": 0.1364113688468933
},
{
"Description": "Generalized abdominal pain",
"Code": "R10.84",
"Score": 0.12508003413677216
},
{
"Description": "Left lower quadrant pain",
"Code": "R10.32",
"Score": 0.10063883662223816
},
{
"Description": "Lower abdominal pain, unspecified",
"Code": "R10.30",
"Score": 0.09933677315711975
}
]
},
{
"Id": 1,
"Text": "diabetes",
"Category": "MEDICAL_CONDITION",
"Type": "DX_NAME",
"Score": 0.9899052977561951,
"BeginOffset": 75,
"EndOffset": 83,
"Attributes": [],
"Traits": [
{
"Name": "DIAGNOSIS",
"Score": 0.9258432388305664
}
],
"ICD10CMConcepts": [
{
"Description": "Type 2 diabetes mellitus without complications",
"Code": "E11.9",
"Score": 0.7158446311950684
},
{
"Description": "Family history of diabetes mellitus",
"Code": "Z83.3",
"Score": 0.5704703330993652
},
{
"Description": "Family history of other endocrine, nutritional and metabolic diseases",
"Code": "Z83.49",
"Score": 0.19856023788452148
},
{
"Description": "Type 1 diabetes mellitus with ketoacidosis without coma",
"Code": "E10.10",
"Score": 0.13285516202449799
},
{
"Description": "Type 2 diabetes mellitus with hyperglycemia",
"Code": "E11.65",
"Score": 0.0993388369679451
}
]
}
],
"ModelVersion": "0.1.0"
}
For more information, see `Infer ICD10-CM <https://docs.aws.amazon.com/comprehend/latest/dg/ontology-linking-icd10.html>`__ in the *Amazon Comprehend Medical Developer Guide*.
**Example 2: To detect medical condition entities and link to the ICD-10-CM Ontology from a file pathway**
The following ``infer-icd-10-cm`` example labels the detected medical condition entities and links those entities with codes in the 2019 edition of the International Classification of Diseases Clinical Modification (ICD-10-CM). ::
aws comprehendmedical infer-icd10-cm \
--text file://icd10cm.txt
Contents of ``icd10cm.txt``::
{
"The patient complains of abdominal pain, has a long-standing history of diabetes treated with Micronase daily."
}
Output::
{
"Entities": [
{
"Id": 0,
"Text": "abdominal pain",
"Category": "MEDICAL_CONDITION",
"Type": "DX_NAME",
"Score": 0.9475538730621338,
"BeginOffset": 28,
"EndOffset": 42,
"Attributes": [],
"Traits": [
{
"Name": "SYMPTOM",
"Score": 0.6724207401275635
}
],
"ICD10CMConcepts": [
{
"Description": "Unspecified abdominal pain",
"Code": "R10.9",
"Score": 0.6904221177101135
},
{
"Description": "Epigastric pain",
"Code": "R10.13",
"Score": 0.1364113688468933
},
{
"Description": "Generalized abdominal pain",
"Code": "R10.84",
"Score": 0.12508003413677216
},
{
"Description": "Left lower quadrant pain",
"Code": "R10.32",
"Score": 0.10063883662223816
},
{
"Description": "Lower abdominal pain, unspecified",
"Code": "R10.30",
"Score": 0.09933677315711975
}
]
},
{
"Id": 1,
"Text": "diabetes",
"Category": "MEDICAL_CONDITION",
"Type": "DX_NAME",
"Score": 0.9899052977561951,
"BeginOffset": 75,
"EndOffset": 83,
"Attributes": [],
"Traits": [
{
"Name": "DIAGNOSIS",
"Score": 0.9258432388305664
}
],
"ICD10CMConcepts": [
{
"Description": "Type 2 diabetes mellitus without complications",
"Code": "E11.9",
"Score": 0.7158446311950684
},
{
"Description": "Family history of diabetes mellitus",
"Code": "Z83.3",
"Score": 0.5704703330993652
},
{
"Description": "Family history of other endocrine, nutritional and metabolic diseases",
"Code": "Z83.49",
"Score": 0.19856023788452148
},
{
"Description": "Type 1 diabetes mellitus with ketoacidosis without coma",
"Code": "E10.10",
"Score": 0.13285516202449799
},
{
"Description": "Type 2 diabetes mellitus with hyperglycemia",
"Code": "E11.65",
"Score": 0.0993388369679451
}
]
}
],
"ModelVersion": "0.1.0"
}
For more information, see `Infer-ICD10-CM <https://docs.aws.amazon.com/comprehend/latest/dg/ontology-linking-icd10.html>`__ in the *Amazon Comprehend Medical Developer Guide*.
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